FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467127
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10930.233983477726614No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10090.21600121594341584No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9680.20722415959685483No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9510.20358489233120758No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG9390.2010159977907507No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT9060.19395153780449428No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT9050.1937374632594562No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8920.19095449417396126No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7930.16976111421519202No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7860.1682625923999255No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7790.166764070584659No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7580.16226850513885946No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6690.14321587063047095No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6620.14171734881520442No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5600.11988174522132096No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5510.11795507431597832No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5510.11795507431597832No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5490.11752692522590216No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5350.11452988159536914No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5050.10810764524422695No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4970.10639504888392236No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG4920.105324676158732No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG4770.1021135579831609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)