FastQCFastQC Report
Wed 31 May 2023
EGAF00007940739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467127
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT19210.41123720101813854No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18820.40288829376165364No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12100.25903019949606854No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10770.2305582850060048No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9920.21236194867776856No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA9690.20743823414189289No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC9020.193095239624342No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT8370.17918039419686724No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8230.17618335056633422No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7680.16440925058924016No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG7580.16226850513885946No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7250.15520404515260303No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7160.1532773742472604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6900.14771143607627046No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6140.13144177065337692No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5860.12544768339231088No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5850.1252336088472728No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG5780.1237350870320063No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5770.12352101248696822No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5670.12138026703658747No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC5520.11816914886101637No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5420.11602840341063565No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5110.10939209251445538No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5110.10939209251445538No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4900.10489652706865585No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT4820.10318393070835126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)