FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464409
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7650.16472548981608884No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7200.15503575512102477No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA6040.13005777235152635No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6010.12941179003852207No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5970.1285504802878497No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG4850.10443380726902363No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAG4680.10077324082866611No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)