FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524981
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25390.483636550656119No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21720.4137292587731747No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17920.3413456867962841No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17210.3278213878216545No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11550.22000796219291746No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11270.21467443583672552No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8250.15714854442351248No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7150.13619540516704415No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7130.13581443899874474No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7090.13505250666214588No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6110.11638516441547408No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5790.11028970572268329No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5380.10247989927254511No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5270.10038458534689827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)