FastQCFastQC Report
Wed 31 May 2023
EGAF00007940745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524981
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG84171.6032961192881265No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA50930.9701303475744837No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23570.44896862934087134No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22100.4209676159708637No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17100.32572607389600766No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8560.16305352003215354No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8020.1527674334880691No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7620.14514811012208062No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7450.1419098976915355No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7340.13981458376588868No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6310.12019482609846834No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5900.11238501964833013No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5680.10819439179703645No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5510.10495617936649136No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5480.10438473011404222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)