FastQCFastQC Report
Sun 21 May 2023
EGAF00007940746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427591
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12730.2977144046530446No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11310.26450509949928785No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8490.1985542258840808No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7770.18171570496104922No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7120.16651426246109016No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6810.15926434373034043No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6800.15903047538418721No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6190.14476450626884102No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6000.1403210076919299No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5160.12067606661505972No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4700.10991812269201176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)