FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507712
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18320.36083448884406905No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14060.27692865246438925No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12710.25033877473843436No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10600.20877978066305308No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9980.19656813311483678No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8880.17490230681961427No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8560.1685995209882768No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8480.16702382453044246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)