FastQCFastQC Report
Sun 21 May 2023
EGAF00007940749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507712
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36600.720881129459221No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19480.3836820874826673No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19130.376788415479642No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16290.3208511912265221No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13790.27161067691919827No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10760.21193117357872182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)