FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424742
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46281.0896026293608827No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13320.3136021396518357No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12620.29712154672718966No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8730.20553653747451395No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7850.1848180777978161No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7780.18317001850535147No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6890.16221612178687297No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6870.16174524770331164No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5830.13725979535812327No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5410.12737143960333566No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA5180.12195638764238056No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4990.11748308384854807No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4710.11089084667868965No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4640.10924278738622506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)