FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453199
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49591.0942213023417968No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40760.8993841557461512No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17990.3969558626563606No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17490.3859231816486797No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16570.36562304859454675No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15490.3417924576179559No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11840.26125388626188495No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10680.23565806632406514No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10480.23124499392099276No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8970.19792629727779631No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8230.1815979293864285No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG8220.18137727576627488No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8020.17696420336320248No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7770.171447862859362No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6800.15004446170446095No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6560.14474877482077408No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6500.14342485309985237No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5600.12356602728602667No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5270.11628445782095724No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5170.11407792161942105No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5130.11319530713880659No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC5060.11165073179773123No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4970.10966484921634866No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4660.10282458699158648No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4600.10150066527066476No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)