FastQCFastQC Report
Wed 31 May 2023
EGAF00007940763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373949
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32870.8789968685569423No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30680.8204327328058104No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23640.632171766738245No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18600.4973940296671471No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15580.4166343538824813No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15290.40887928567799353No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG15270.4083444533880288No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14810.39604331071884136No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14800.39577589457385903No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9890.26447456738753145No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9300.24869701483357354No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7570.20243402175162922No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6850.18318005931290096No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6670.1783665687032189No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6580.17595982339837785No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6510.1740879103835015No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6370.1703440843537488No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6190.1655305937440667No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6110.163391264584208No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5800.15510136408975556No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5660.15135753806000282No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5570.1489507927551618No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5370.14360246985551506No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5350.14306763756555038No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5310.14199797298562106No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4870.13023166260639818No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4790.1280923334465395No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT3960.10589679341300551No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC3880.10375746425314682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)