FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445882
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19910.4465306964622927No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17810.3994330338520057No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15650.35098972373856757No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14060.31533006490506454No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13630.30568625779914865No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12950.29043558609677No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10140.2274144280325288No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9260.20767826465297995No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8470.18996057252815768No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7360.16506609371986308No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6990.15676793411709825No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6690.15003969660134295No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6520.1462270286757483No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6510.14600275409188979No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6160.13815314365684195No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5490.1231267465383218No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5070.1137072140162644No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5010.11236156651311334No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC4770.1069789765005091No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4460.1000264644008953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)