FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445882
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28750.6447894285932152No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26720.5992616880699378No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18900.4238789634925832No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16490.3698287887826824No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15450.3465042320613974No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15060.3377575232909155No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14450.3240767736755465No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10610.23795533347387873No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9840.22068619051677352No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9780.21934054301362244No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8670.19444606420532787No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7930.17784974499979816No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7500.16820593789388225No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7100.15923495453954187No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7070.15856213078796633No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6970.15631938494938125No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6860.15385236452693762No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6470.14510565575645576No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6150.13792886907298343No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6100.1368074961536909No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5840.13097635697336965No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5550.12447239404147287No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5050.11325866484854738No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC4840.10854889858751868No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4690.10518477982964101No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4600.10316630857491445No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4550.1020449356556219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)