FastQCFastQC Report
Sun 21 May 2023
EGAF00007940769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429486
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44181.028671481724666No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17770.41375039000107106No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13630.3173560954256949No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12050.28056793469402963No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10520.2449439562639993No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9760.22724838527914765No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9440.21979761854868377No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7630.1776542192294976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7570.1762572004675356No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7440.17323032648328468No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7160.1667109055941288No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6990.16275268576856988No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6580.15320639089516305No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6550.15250788151418207No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6230.14505711478371822No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6200.1443586054027372No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5880.13690783867227335No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5770.1343466376086764No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5670.13201827300540644No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5560.1294570719418095No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5550.1292242354814825No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5540.12899139902115553No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5500.12806005317984756No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5350.1245675062749426No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4780.11129582803630386No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4740.11036448219499588No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4680.1089674634330339No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4570.10640626236943695No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4510.10500924360747498No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4400.10244804254387803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)