FastQCFastQC Report
Sun 21 May 2023
EGAF00007940771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523323
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23420.4475247600430327No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16170.30898699273679925No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15980.305356347800498No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15070.28796746942137075No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14430.27573792858330326No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12380.23656518058636825No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12320.2354186611327994No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10750.2054180687644151No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10150.1939528742287268No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10120.1933796145019424No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9680.184971805175771No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9220.17618182269840998No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7940.15172274102227495No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7880.15057622156870615No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7790.14885644238835288No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6930.1324229968871997No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6800.12993887140446722No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6790.12974778482887242No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6670.12745474592173475No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6560.1253527935901919No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6540.12497062043900231No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5920.1131232527521244No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5490.1049065300015478No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5380.10280457767000495No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5380.10280457767000495No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC5250.1003204521872725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)