FastQCFastQC Report
Wed 31 May 2023
EGAF00007940772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546602
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23610.4319413394023439No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22810.41730546174364525No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG17900.3274777626133823No Hit
GGATGCGGACGCAGTGGTAGCACGAGACTGACGCGGGGCGGTAG13270.24277262066366387No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10070.18422911002886927No Hit
CGGGCTTTTACGACGTGCGCGCGGTGCGGTTGGAGCCGGCTCCG8380.15331081847486835No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC6870.12568559939407467No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6180.11306215491344708No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5640.10318293749382548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)