FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546602
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53310.9752982974815314No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT17970.32875840190851846No Hit
TCTAACAGCGTAAACGGTTCTTCCCAGGCCG12870.23545468183431453No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10630.19447422438995832No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10460.19136410038748486No Hit
CGCGCTGCGGAAGTACAGGCGGACTACGCTT8280.15148133376753103No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC7180.13135700198682038No Hit
TTCAAATACACTGTCGGTGAAGCCCCAGAAG6560.12001419680132894No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6550.1198312483305952No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6500.11891650597692653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)