FastQCFastQC Report
Sun 21 May 2023
EGAF00007940775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475403
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41420.8712608039915609No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22190.4667618841277821No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17940.37736404692439884No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11160.23474820310347222No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10970.23075159391085037No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9710.2042477645282003No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9010.18952341487117247No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8850.18615784923528036No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8350.17564045662311767No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8030.1689093253513335No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7910.16638515112441446No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7480.1573401934779545No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6700.14093306100298061No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6010.12641905919819604No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5870.1234741892667905No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4900.10307044759919479No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4760.10012557766778923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)