FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497854
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16770.33684574192433925No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12360.24826555576534484No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11200.22496555214982705No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11150.22396124164915818No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9720.1952379613300285No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA7790.15647157600421005No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7710.15486467920313987No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7520.15104829930059818No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7360.1478345056984578No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6480.13015864088668566No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6080.1221241568813347No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5830.11710260437799032No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5590.11228191397477975No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5440.10926898247277314No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5230.1050508783699639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)