FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940781

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940781
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501306
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46690.9313672686941709No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9610.19169928147678264No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9340.18631334953102496No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8130.16217639525559238No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7860.1567904633098347No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7650.15260140512980097No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7000.13963527266779172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)