FastQCFastQC Report
Sun 21 May 2023
EGAF00007940782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482686
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30040.622350762193227No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT20910.4332008800752456No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20580.42636413734808964No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT19050.3946665119767302No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17550.36359040867147585No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17000.35219583745954924No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15810.3275421288373808No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12730.2637325300505919No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12320.2552383951471557No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9990.20696684801299395No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9960.20634532594688884No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9870.20448075974857363No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9860.2042735857265386No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9760.20220184550618828No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9550.1978511910434527No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9400.19474358071292724No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT9100.18852836005187637No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9010.18666379385356113No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8680.17982705112640515No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT8230.17050422013482885No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7940.164496173495813No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7510.15558769054830676No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7430.15393029837202654No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7400.15330877630592143No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6750.13984246487364457No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6550.13569898443294398No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6420.13300572214648862No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT6210.128655067683753No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6120.12679050148543775No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6120.12679050148543775No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6110.12658332746340273No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6100.12637615344136768No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5900.12223267300066709No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5880.12181832495659704No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5680.11767484451589647No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5510.11415288614130097No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5320.11021657972263542No Hit
TTGACCACGCTGCTGCGGCTGCTGCGGTTCTTCGAAAGTGCTCG5200.10773049145821507No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5110.10586592525989981No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4830.100065052642919No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT4830.100065052642919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)