FastQCFastQC Report
Sun 21 May 2023
EGAF00007940783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482686
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44450.9208885279457039No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41320.8560430590487398No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30020.621936414149157No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27580.57138595277261No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21240.44003762280240155No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20620.42719283343622977No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA19710.4083399974310421No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17520.3629688866053708No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12580.26062491972006646No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11320.2345209929436528No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10870.2251981619520765No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10710.22188337759951604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10420.2158753309605002No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10370.21483946085032504No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9830.20365206366043348No Hit
TCCTACACCAACGGCAAACTGACTATCACCC9750.20199467148415326No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9580.19847271310955775No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9210.1908072742942617No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9120.18894270809594643No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG8940.1852135756993159No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8940.1852135756993159No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7810.16180291120935764No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7670.15890247490086723No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7670.15890247490086723No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7540.15620921261441184No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7280.1508226880415011No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7270.15061551401946607No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6650.13777072465329426No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6550.13569898443294398No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6430.13321289616852364No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6370.13196985203631345No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6360.13176267801427843No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6180.1280335456176479No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5640.11684614842775636No Hit
CTGTCCCGTTGCACCCTGAACCGCAACGCAC5540.11477440820740607No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5440.11270266798705576No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA5160.10690179537007495No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4830.100065052642919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)