FastQCFastQC Report
Sun 21 May 2023
EGAF00007940785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474053
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42150.8891410875999097No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT33360.7037187824990033No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG22230.4689349081220876No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT21770.4592313517686841No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18980.40037717301651926No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA18860.3978458104895445No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG18190.3837123697139349No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC15160.31979546590782043No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14710.3103028564316648No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13710.28920816870687455No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12830.27064484350905915No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG12600.26579306533235736No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11860.25018299641601255No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10530.22212706174204153No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG10180.2147439210383649No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT10170.21453297416111702No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10100.21305634602038168No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9250.19512586145430996No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9140.19280544580458303No Hit
CGTACTATCGAACGTCTGCTGGAAGATCCGC8850.18668798636439385No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC8600.18141431443319628No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8560.18057052692420467No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8370.17656253625649454No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8280.1746640143612634No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7850.1655932986396036No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7510.1584211048131749No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7390.15588974228620006No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC7340.15483500789996055No Hit
GGCAAATCCCTGACCACCTCTATTGTTGGTC7080.1493503890915151No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6930.14618618593279653No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6880.14513145154655704No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6710.1415453546333427No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6170.13015422326195594No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6140.12952138263021223No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6030.1272009669804853No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5910.12466960445351048No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5830.12298202943552726No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5650.119184985645065No Hit
GGTGACCTGGTCGAATACATCATGAACTATA5540.11686456999533806No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5460.11517699497735487No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG5460.11517699497735487No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5230.11032521680065309No Hit
AACGGTCGTAACGCGTCCAAACGTCGTGCCT5190.10948142929166148No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5120.10800480115092616No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5040.10631722613294295No Hit
ATGCTGTACGCCTTCAAACTGGGTCGCAAAC4860.1025201823424807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)