FastQCFastQC Report
Wed 31 May 2023
EGAF00007940788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514350
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA50310.9781277340332458No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA47280.9192184310294547No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG25790.5014095460289686No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG23220.45144356955380577No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21330.4146981627296588No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG19040.37017595022844363No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG18930.3680373286672499No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA18880.3670652279576164No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT17640.3429571303587052No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14140.2749100806843589No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG14050.2731602994070186No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC12550.24399727811801306No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG12000.23330417031204434No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT11940.2321376494604841No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT10820.21036259356469333No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG10470.20355788859725865No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10250.1992806454748712No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10240.1990862253329445No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9920.19286478079128996No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG9250.17983863128220084No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT9170.17828327014678721No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG8540.16603480120540487No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8460.16447944006999124No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8320.16175755808301742No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7750.1506756099931953No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7710.1498979294254885No Hit
GTCGATGCAAGCACCGGAGTTGAAGGTCTGGGTGGCGCTAGAAC6720.13065033537474482No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6710.1304559152328181No Hit
GTCAATGCACGCGCCAGAGTTGAAGGTCTGAGTAGCAGAGCTGC6630.12890055409740447No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6560.12753961310391757No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6250.12151258870418974No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6120.1189851268591426No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6110.11879070671721591No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6030.11723534558180228No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5970.11606882473024205No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5800.1127636823174881No Hit
GATTGCCGGGGATGGAGTTTCCGGGCGCGCCGGGGACTCCCAGG5630.10945853990473413No Hit
TGGGGAACGGGAAACGGAGCGCGGGCTCAGAGAACGAATACGAG5530.10751433848546708No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5410.10518129678234667No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5380.10459803635656653No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG5300.1030426752211529No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT5300.1030426752211529No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5250.1020705745115194No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5200.10109847380188589No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5190.10090405365995916No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)