FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473959
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13010.2744963171919934No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11080.2337754953487538No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8560.18060633936690726No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT7690.16225032123031738No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6300.13292288995461632No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6030.12722619467084706No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5850.12342839781500088No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5650.11920862353072734No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5530.11667675896016322No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5270.11119105239060763No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5240.11055808624796659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)