FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473959
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46620.9836293856641608No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26440.5578541603809611No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13000.2742853284777797No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12780.26964357676507883No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10910.2301886872071213No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA7980.168368993942514No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6590.13904156266681295No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5530.11667675896016322No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5170.10908116524847085No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4820.10169656025099218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)