FastQCFastQC Report
Sun 21 May 2023
EGAF00007940794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481331
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT37640.7819982506840408No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28710.5964710355244105No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24460.5081742086007343No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT24340.5056811217228893No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21340.44335394977676484No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20390.42361701199382545No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18260.37936471991207715No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15930.3309572830339205No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15870.329710739594998No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT14040.29169116470786216No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13860.2879515343910947No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13850.28774377715127425No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12770.2653059952506695No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12460.25886552081623665No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12140.2522172891419834No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11850.24619232918719133No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG10800.22437781900604784No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9700.2015245226258022No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9680.20110900814616137No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9300.1932142330329856No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA9280.1927987185533448No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8600.1786712262455566No Hit
TTCCGGGTGGATGTGACCGTGATGGTCGTGATCGTGATCATGGT7920.1645437339377684No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC7280.15124727058926185No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7130.14813091199195563No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6810.14148268031770236No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6780.14085940859824114No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6240.12964051764793874No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6210.1290172459284775No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6140.1275629452497346No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5630.11696732601889344No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5520.11468199638086887No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5070.10533292058895023No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4870.10117777579254192No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4850.1007622613129011No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4820.10013898959343986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)