FastQCFastQC Report
Wed 31 May 2023
EGAF00007940795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481331
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44950.9338687929927638No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42040.8734114362050232No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC41370.8594917011370554No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39660.8239652131277645No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT37450.7780508631274529No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA25420.528118903623494No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA24910.5175232843926528No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20220.42008513891687843No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17850.37084667307944014No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17260.3585889959300357No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15850.3292952251153572No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG14750.3064419287351116No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13590.2823420889159435No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13010.27029216900635944No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12690.26364393733210617No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12430.2582422490967754No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT10970.22790969208299489No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9610.19965470746741848No Hit
TCCTACACCAACGGCAAACTGACTATCACCC9170.19051338891532021No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG9000.1869815158383732No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC8680.18033328416411992No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8100.16828336425453586No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7310.1518705423087231No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA7160.14875418371141688No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6820.14169043755752278No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6770.1406516513584207No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6590.13691202104165323No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6580.13670426380183284No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6300.1308870610868612No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6020.1250698583718896No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5860.12174574253476299No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5690.11821386945781592No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5430.11281218122248515No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5370.11156563778356265No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5320.11052685158446059No Hit
ATGGCTTCCGAAAACAAACAGCGTCCGGGCT5110.10616394954823188No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5090.10574843506859105No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5050.10491740610930939No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4930.10242431923146442No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4910.10200880475182358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)