FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007940799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457189
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41310.9035650464031286No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26880.5879406547401622No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16870.36899400466765386No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16370.35805760856013596No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13310.2911268643821264No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12320.26947280008924096No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12000.2624735065804295No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11600.2537243896944152No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11190.24475654488625054No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9120.19947986500112644No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8090.17695088901963957No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7890.17257633057663244No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7580.16579576498997134No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7130.15595300849320523No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6760.14786007537364196No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6170.13495512796677087No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5840.12773710653580905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)