FastQCFastQC Report
Sun 21 May 2023
EGAF00007940801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417829
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT73431.7574175081193504No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38520.9219082447604163No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14430.34535659324747686No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG13130.31424338664860507No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC12180.29150681259558336No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10530.25201697345086144No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10440.24986298222478576No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC9900.2369390348683313No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9760.23358838184999128No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9400.2249724169456883No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9260.22162176392734825No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG8120.19433787506372224No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7600.18189259242417352No Hit
ATGGCCCGTCACCACAACATTAACGGTAACA6700.16035268016341614No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6520.15604469771126464No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6390.1529333770513775No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6360.1522153799760189No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6040.14455674450552736No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5970.14288141799635737No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5840.13977009733647017No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5590.13378678837514868No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5430.12995747063990293No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5110.12229883516941141No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT5100.12205950281095855No Hit
AGCGATGACAAACTGGAACGTAACTGCTACT5070.12134150573559997No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4890.1170335232834485No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4450.10650289951152266No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4310.10315224649318261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)