FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464870
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29400.6324348742659238No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20130.4330242863596274No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20010.4304429195258889No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19820.4263557553724697No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19660.42291393292748514No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18480.3975304923957235No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15210.32718824617635034No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA13000.27964807365500033No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11720.25211349409512335No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10090.21704992793684258No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9740.20952094133843868No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9650.20758491621313485No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9160.19704433497536944No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG8560.18413750080667712No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7850.16886441370705788No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7670.1649923634564502No Hit
AGAGTTACCGTTGCGTACGCCTTTTGCGGAACGGTTACGCAGCA7160.15402155441306173No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7080.1523006431905694No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT6730.14477165659216557No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6090.13100436681222707No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5880.12648697485318477No Hit
ACGACCGGAGTCATCACCGGAAGTAGAGCTGTCACGCTGGCGCG5780.12433583582506938No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5460.11745219093510013No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5210.11207434336481167No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5000.10755695140576935No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4920.10583604018327705No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4900.10540581237765397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)