FastQCFastQC Report
Sun 21 May 2023
EGAF00007940803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464870
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39920.8587347000236625No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22640.48701787596532364No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG22510.4842213952287736No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21390.46012863811388127No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20680.44485555101426205No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20620.44356486759739283No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20060.43151848903994666No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16510.3551530535418504No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG14210.3056768558951965No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12960.2787876180437542No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12250.2635145309441349No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10480.22543937014649257No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9860.21210230817217718No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA9010.1938176264331964No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8970.19295717082195024No Hit
ATGGCATCCACCACCCCGATCACCATGGAAG8720.18757932325166174No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8630.1856432981263579No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG7680.16520747735926175No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7650.1645621356508271No Hit
AAGCAGCGTGGCCCGATCCCAGAAGGTCTGG7070.15208552928775787No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6220.13380084754877708No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6000.12906834168692322No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5960.12820788607567707No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5860.12605674704756167No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5830.12541140533912706No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5240.11271968507324628No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5100.10970809043388474No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5040.10841740701701551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)