FastQCFastQC Report
Sun 21 May 2023
EGAF00007940805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443403
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18870.425572222109458No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12980.292735953523093No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10640.23996229163988514No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8980.2025245656885497No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8260.1862865158783319No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8260.1862865158783319No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7910.17839301944280936No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6870.1549380586058281No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6520.14704456217030556No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6490.1463679767615465No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5440.12268748745497889No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5160.11637269030656085No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4720.1064494376447611No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4620.1041941529488975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)