FastQCFastQC Report
Wed 31 May 2023
EGAF00007940808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377960
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23760.6286379511059371No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG15470.4093025717007091No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14570.38549052809821144No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT13120.3471266800719653No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12540.3317811408614668No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12430.3288707799767171No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12130.32093343210921793No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11600.3069107842099693No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10550.2791300666737221No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10480.27727801883797226No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9390.24843898825272515No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8380.22171658376547781No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8280.2190708011429781No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT8240.2180124880939782No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8210.21721875330722829No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8160.21589586199597838No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7940.21007514022647897No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7450.19711080537623027No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7140.18890887924648112No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7120.18837972272198114No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7120.18837972272198114No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7050.18652767488623134No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6650.17594454439623242No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC6360.16827177479098318No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6250.16536141390623346No Hit
TTCGTAAGACGGCAGTGCGGACGGGGACTGACGATCGTCGGTGG5930.1568949095142343No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5360.1418139485659858No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5300.14022647899248597No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5080.13440575722298656No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4650.1230288919462377No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4630.12249973542173774No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG4520.11958937453698804No Hit
GTCCTCGTACAGAGAGCTCCAGCAAATGGTACCGTCTTCGATTG4500.11906021801248809No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4460.1180019049634882No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG4350.11509154407873849No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4230.1119166049317388No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4160.110064557095989No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4130.10927082230923907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)