FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409030
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14350.35083001246852313No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT12680.3100017113659145No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10650.26037209984597703No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8610.21049800748111383No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8520.20829767987678166No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG8270.20218565875363667No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7110.17382588074224384No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6860.16771385961909885No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6760.16526905116984086No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG6160.15060020047429284No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5930.14497714104099943No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5390.13177517541500622No Hit
GCCCTCAACATCCAGCATTTCCATGTCGCCCAGGGTAAACTTAG4680.11441703542527443No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG4510.11026086106153583No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4500.11001638021661003No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4260.10414883993839083No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4240.10365987824853924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)