FastQCFastQC Report
Sun 21 May 2023
EGAF00007940811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409030
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA20960.512431850964477No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13970.34153974036134266No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA13570.33176050656431066No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12490.3053565753123243No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9810.23983570887220984No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8850.2163655477593331No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG8650.21147593086081706No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7450.18213822946972105No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7090.17333691905239224No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7010.17138107229298585No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6780.16575801285969244No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6400.15646774075251205No Hit
GAACCGATCTACGCTACCATCGACGACCTGG6350.15524533652788305No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5300.12957484781067405No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4740.11588392049482923No Hit
TTCAACAAAAAACAGAGCTCCGACGTAAAAG4660.11392807373542284No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4540.11099430359631324No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4470.10928293768183263No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4210.10292643571376184No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4170.10194851233405863No Hit

[OK]Adapter Content

Adapter graph