FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382933
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58751.5342109455178843No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29720.7761148817156004No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13250.34601353239339516No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12030.31415417318434297No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9110.23790062491349662No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7940.20734697714743833No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4680.12221459106423317No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4660.1216923064870356No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4380.11438032240626951No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4350.11359689554047314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)