FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007940815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences359364
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55081.532707783751294No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14190.39486426019300763No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12740.3545151990739195No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9680.26936476664329206No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7650.21287608107656858No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5310.14776104451197117No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4920.13690853841787157No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4880.1357954608697588No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4040.11242083235939047No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4030.11214256297236228No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3860.10741198339288298No Hit
CTGGCTGAAAACGGTCACAACGTATGGGCAC3680.10240313442637548No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT3660.1018465956523191No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)