FastQCFastQC Report
Wed 31 May 2023
EGAF00007940819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399300
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51981.301778111695467No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41521.0398196844477836No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27300.6836964688204358No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22680.5679939894815929No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG20740.5194089656899574No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG17250.4320060105184072No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16150.404457801152016No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13440.33658903080390684No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13230.3313298271975958No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12590.31530177811169546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10890.27272727272727276No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10780.2699724517906336No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8790.2201352366641623No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7860.19684447783621337No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7850.19659403956924618No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7440.1863260706235913No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG7170.17956423741547708No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7090.17756073127973954No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5540.1387427998998247No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5480.13724017029802155No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5320.13323315802654645No Hit
GCGTCTCGCGTACTGGAAGGTACTAAAAAGG5310.13298271975957926No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4620.11570247933884298No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4530.11344853493613824No Hit

[OK]Adapter Content

Adapter graph