FastQCFastQC Report
Wed 31 May 2023
EGAF00007940820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380098
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG22660.5961620424206389No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT19930.5243384600813474No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9350.24598919226094326No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8000.21047203615909582No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6600.17363942983125405No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5730.15075059589895237No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5290.1391746339102021No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4930.12970339228304278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)