FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380098
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57301.5075059589895237No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG21600.5682744976295587No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA19410.5106577777310062No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13460.35411920083767867No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9030.23757031081457938No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6960.18311067145841334No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5940.15627548684812864No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5330.1402269940909976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5180.13628064341301452No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT3920.10313129771795694No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA3870.10181584749196258No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA3810.10023730722076937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)