FastQCFastQC Report
Wed 31 May 2023
EGAF00007940822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396107
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG23440.5917592973615715No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT21090.5324318934025402No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10610.2678569174490731No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8350.21080162683315365No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6780.1711658718477583No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5790.1461726250735281No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5370.13556942947233955No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4930.1244613197949039No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4250.10729424120250336No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT4010.10123527228753848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)