FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407278
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT44461.0916376529053866No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC42231.036883897485256No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT34690.8517523657059797No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA29650.7280039678057739No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21130.5188102475459023No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA18790.4613556342350925No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18700.45914584141544595No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC15890.3901511989353709No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT15840.3889235362577895No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC15340.3766469094819755No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14430.35430344874999387No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT14420.3540579162144776No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT13450.3302412602693983No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA13240.3250850770235564No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12440.3054424741822539No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA12070.2963577703681515No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11700.28727306655404905No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11680.28678200148301647No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11640.28579987134095136No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC11640.28579987134095136No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT11460.28138028570165835No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGTGAC11450.281134753166142No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10430.25609043454348135No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9790.24037635227043935No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9160.22490780253291362No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC9130.22417120492636478No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8820.21655969632536007No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8710.21385883843468098No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8540.2096847853309042No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8440.2072294599757414No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT7800.19151537770269939No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC7610.18685025952789003No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7490.18390386910169468No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7430.18243067388859696No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT7350.18046641360446675No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7310.1794842834624016No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7170.17604682796517368No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7130.17506469782310854No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7090.1740825676810434No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7080.17383703514552712No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6960.17089064471933177No Hit
GTCAGTGCCGAAGGACTGACGCAGCTTGGTGCGAACCTGGTTTG6450.1583684854080014No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6280.15419443230422464No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6210.15247570455561066No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6210.15247570455561066No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6140.1507569768069967No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC6140.1507569768069967No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6000.14731952130976875No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5940.14584632609667106No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5610.1377437524246338No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5540.13602502467601982No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG5400.1325875691787919No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5350.1313599065012105No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5260.12915011368156393No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC5220.12816798353949882No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5130.1259581907198523No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5020.1232573328291732No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4970.12202967015159179No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC4830.11859221465436384No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4410.10827984816268003No Hit
CGGGCCTTCACCTGGATCGTCCGCCGGACCCTGTTCGATAGCAC4390.10778878309164748No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4360.10705218548509862No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT4310.10582452280751722No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4300.10557899027200093No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4260.10459686012993581No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4240.10410579505890326No Hit
ACCACCGCCACCACCGCCGCCGTCCGGGCCCTCAGCTTCACCTT4130.10140493716822416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)