FastQCFastQC Report
Sun 21 May 2023
EGAF00007940830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464255
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20700.4458756502353232No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15210.327621673433781No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14860.3200827131641016No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13270.28583429365327245No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10720.230907583117037No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10340.22272242625281366No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG10280.22143003306372575No Hit
AAACGCGTCACCGTCGCCGTGGCCACGAATGATAGCAGAAACGT9890.21302947733465444No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA9250.1992439499843836No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9150.19708996133590376No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7530.1621953452305306No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7480.16111835090629073No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7050.1518561997178275No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6990.15056380652873957No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6870.1479790201505638No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6640.14302484625906023No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6260.1348396893948369No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6250.1346242905299889No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6210.133762695070597No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6160.13268570074635708No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5480.11803857793669427No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5400.11631538701791042No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5310.11437679723427857No Hit
AGTGATATCGTCCTGCGTACGGCGAACGTCCTGCTTGTACAGTT5150.11093041539671086No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5090.10963802220762296No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5050.10877642674823104No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5040.10856102788338305No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4790.1031760562621835No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4780.10296065739733551No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4770.10274525853248753No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4750.10231446080279157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)