FastQCFastQC Report
Sun 21 May 2023
EGAF00007940831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464255
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26980.5811461373598561No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17020.3666088679712658No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15900.34248419510829176No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14930.3215905052180375No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14300.3080203767326146No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12150.26170962079029847No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11680.25158587414244327No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG9960.2145372693885903No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC9600.20678291025406295No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9170.19752075906559974No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9020.19428977609287998No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8740.1882586078771365No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7850.16908810890566606No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7600.1637031372844665No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7480.16111835090629073No Hit
TGGGATGGTTACCGTCGTGAATCTCTGGATA7430.1600413565820508No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7250.15616417701478713No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7180.15465638496085127No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7180.15465638496085127No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6970.15013300879904362No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6950.14970221106934767No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6520.14044005988088443No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6440.1387168689621006No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6350.13677827917846871No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5730.12342354955789384No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5580.12019256658517409No Hit
ACCAACACCACCGCATTCGTCGCTGTAACCT5470.1178231790718463No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5290.11394599950458262No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5220.11243820745064674No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5050.10877642674823104No Hit
CCGAAAGACCAGGAACGTAAACGTCGTTTCA5040.10856102788338305No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5040.10856102788338305No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4920.10597624150520726No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4830.10403765172157543No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4810.10360685399187945No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4750.10231446080279157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)