FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412640
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33720.8171772004652966No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29450.7136971694455215No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20590.49898216362931375No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA16310.39525979061651806No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG14580.3533346258239628No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC13120.31795269484296235No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12410.3007464133385033No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9880.239433889104304No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8780.21277626987204346No Hit
CTGCTGACGCGGACGCGGGCGGAACGGACGACGGTAACGTGGAC8660.20986816595579683No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8580.20792943001163244No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8290.20090151221403646No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7240.17545560294687865No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7180.17400155098875533No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6800.1647925552539744No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6080.14734393175649477No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6070.1471015897634742No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5610.1359538580845289No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5600.13571151609150833No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG5200.1260178363706863No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5160.12504846839860412No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4730.11462776269872044No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4710.11414307871267934No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4630.11220434276851493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)