FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007940837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412640
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT70531.7092380767739435No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20230.4902578518805738No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18660.45221015897634737No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC17220.41731291198138815No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA14810.35890849166343547No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC13200.3198914307871268No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12150.294445521519969No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11840.2869329197363319No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9820.23797983714618068No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9250.2241663435440093No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9220.22343931756494767No Hit
CGTCCGCCGAACCAGCAGCAGCCGATCGAGG9090.22028887165568048No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8450.20477898410236525No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7450.1805447848003102No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7130.17278984102365258No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6390.15485653354013182No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6150.14904032570763862No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6050.1466169057774331No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG5550.13449980612640558No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5290.12819891430787125No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5210.12626017836370684No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4630.11220434276851493No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4520.10953858084528888No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA4330.10493408297789841No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT4280.10372237301279566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)