FastQCFastQC Report
Wed 31 May 2023
EGAF00007940839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences576717
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59591.0332624146678526No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22580.3915265199395891No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18240.31627297270585053No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14850.257491976133875No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12990.2252404558908442No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10080.17478243228481213No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9930.1721815032329548No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6390.11079957760912199No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6220.10785185801701701No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6100.10577111477553115No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5970.10351697626392146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)