FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540386
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43470.8044249851032409No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33100.6125251209320745No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17720.32791375054127975No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13720.253892587890878No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12170.22520938736384732No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11670.21595674203254708No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9200.170248674095924No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9150.16932340956279401No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8210.1519284363399496No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7780.1439711613550314No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7080.1310174578912111No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6370.11787870152076478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)