FastQCFastQC Report
Wed 31 May 2023
EGAF00007940842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544138
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19570.35965141195799594No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16900.3105829771124237No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15920.2925728399780938No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15220.2797084563107153No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14470.2659251880956669No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13840.25434724279502624No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9410.17293407187147378No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9360.1720151873238039No Hit
CTGCAGGGTCGGAGCTGCAATGGCCTGCAGAACGATACGACCGC8920.16392900330430882No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8780.16135612657083312No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG8090.14867551981298863No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8070.14830796599392065No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7430.13654624378374602No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6630.12184409102102775No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6380.11724966828267828No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6140.1128390224538628No Hit
GTTTTCCAGCGGACGTGCGGCCAGACCACGACCACGTGGGCCTT6140.1128390224538628No Hit
GGTAGTCATGGACAGATCGGTACCCAGACCGGTGTCAACGTCAG6040.11100125335852304No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5950.10934726117271723No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5920.10879593044411527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)